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Gut Health & Fatty Liver Disease

Non-alcoholic fatty liver disease (NAFLD) affects around 1 in 4 people around the world.

NAFLD refers to the excess fat accumulating in the liver cells in the absence of excess alcohol consumption. Non-alcoholic steatohepatitis, or NASH, is fatty liver along with inflammation and liver cell injury, and if more advanced, fibrosis of the liver can occur. In fact recently, their names have been changed to metabolic dysfunction-associated liver disease (MASLD) and metabolic dysfunction-associated steatohepatitis (MASH), respectively.

There are various contributing factors to these conditions, including:

  • Obesity, which promotes fat deposition in the liver
  • Reduced insulin functioning (insulin resistance) leading to increased fat production
  • Excess fatty compounds such as triglycerides and LDL cholesterol
  • Excess free fatty acids (building blocks of fats) can cause inflammation, liver cell injury and progression to MASH
  • Genetic factors can influence how an individual utilises fats and susceptibility to inflammation

However, another important factor is gut health. Let’s dive a little deeper into this.

Our digestive system is like a hollow tube open on both ends (your mouth and bottom), so essentially it is in contact with the outside world. So, things that we swallow, such as food and saliva, are not sterile. Therefore our gut needs to have appropriate defences in place to neutralise these potential “threats”.

We have stomach acid which is certainly a barrier to potential harmful bacteria. However, it’s important to understand that not all bacteria are harmful.

Our digestive tract is in fact home to trillions of microbes, most of which are situated in the large intestine. They are collectively known as the gut microbiome. We understand that in a healthy, diverse balance, the gut bacteria play a very important role in maintaining gut and overall health. Here is a picture depicting a healthy gut:

What you can see from the picture is a diverse balance of beneficial bacteria in the top mucus layer. Below that, in the dark blue, is an extra protective mucus layer, and the mucus layers are made by the intestinal cells underneath it (the purple, green and blue blocks). Below that is the other side of the intestines, where the intestinal immune system and blood stream are situated. The intestinal cells form the intestinal wall which is really important, as it separates the “outer” world from your inner self.

Importantly, what we feed the good bacteria is key, as what the bacteria produce following being fed, i.e. postbiotics such as short chain fatty acids (SCFAs) – examples being acetate, butyrate and propionate – are what fuel the intestinal cells to produce the mucus! And what the bacteria like to feed on is fibre, especially prebiotic fibres.

So in this way, you see that there is a wonderful relationship between the beneficial bacteria and intestinal cells, with the bacteria providing the fuel for the cells, which then make the mucus to provide a home for the bacteria as well a protective layer for themselves.

However, if this relationship is disrupted, this can lead to imbalances in the gut and subsequent imbalances across the body. Take a look at this image:

What differences do you see compared to the first one?

You can see that the mucus layers have been eroded, allowing bacteria and toxins to be in contact with the intestinal cells. As a result, this disrupts the intestinal wall, leading to bacterial toxins (known as endotoxins) such as LPS leaking to the other side of the intestinal wall and blood stream. This is known as intestinal hyperpermeability, or leaky gut. This triggers the immune system, leading to irritation, or inflammation, not just in the gut, but in other parts of the body too.

This occurs due to a reduction in beneficial bacteria which no longer provide the fuel for the cells to produce mucus, and also due to direct impact on the intestinal wall. These disruptions could occur due to e.g. a poor diet, antibiotics and other medications, stress and poor sleep, pesticides and alcohol intake.

So what does this have to do with MASLD and MASH?

Well, blood from the intestines is circulated to the liver via the hepatic portal vein. So in a healthy gut environment, the liver will receive nutrients following the digestive process. However, in a leaky gut state, endotoxins will be circulated to the liver as well. The endotoxins will trigger the liver immune system, leading to liver cell inflammation, insulin resistance, and eventual fatty liver.

Interestingly, we saw earlier how SCFAs are beneficial to gut health. However, if they are not in the right balance e.g. if there is too much acetate and propionate being produced in comparison to butyrate due to an imbalance in gut bacteria, this could contribute to fat build up in the liver too.

A nutrient called choline is important for the transport of fats out of the liver. However if there are less favourable bacteria in the gut, the choline can be converted into something called trimethylamine (TMA), which reduces choline levels. Additionally, TMA can then be converted into something called TMAO, which can increase the risk of cardiovascular diseases.

Another contributing factor can be bile, or more specifically bile acids. Bile is a liquid produced by the liver and stored in the gall bladder, and has functions such as helping in the digestion process of fats in the diet, and getting rid of bilirubin (a yellow pigment), cholesterol, toxins, medications and hormones. Bile is made up of various components including water, bile salts (made from primary bile acids), cholesterol, amongst other things. It is released by the gallbladder into the small intestine, and in order to not put too much strain on the liver to produce more bile salts, a lot of these are reabsorbed from the gut and taken back to the liver. However, if there are less beneficial bacteria in the gut, the bile salts can be converted into secondary bile acids, which differ from the primary ones made by the liver. These secondary bile acids can lead to increased fat build up in the liver and reduce fat breakdown, and can cause liver inflammation and damage to liver cells, leading to NASH.

So, is there anything we can do to prevent, improve and even reverse MASLD/MASH? Yes!

The key thing is to maintain, improve or rebuild a healthy gut environment by ensuring a diverse range of beneficial bacteria, healthy mucus layers, and a strong gut lining. How can we do this? Here are some tips:

  • Feeding good bacteria to allow them to thrive is key. Beneficial bacteria feed on fibres, in particularly prebiotic fibres, which are found in fruits, vegetables, whole grains, legumes, nuts and seeds. The SCFA balance as a result will contribute to a strong gut lining and protective mucus layer. Additionally, these food sources contain plant nutrients (phytonutrients) which good bacteria also benefit from. So a diet rich in a diverse range of whole plant foods is important
  • Include choline rich foods such as cruciferous vegetables and legumes
  • Reducing/minimising processed foods, fast foods, animal products is also important, as these foods can imbalance bacteria in the gut, eventually contributing to a leaky gut, inflammation and disease
  • Eating as organic as possible is important, as pesticides can also impact good gut bacteria levels. For more guidance on the must buy organic foods, please take a look at https://www.pan-uk.org/dirty-dozen/
  • Be mindful of alcohol intake as this can also impact on gut and liver health
  • Only use medications such as antibiotics and ibuprofen if really necessary and under the guidance of your doctor, as these can impact on the diversity of beneficial bacteria and the intestinal lining
  • Manage stress, as chronic stress can contribute to a leaky gut. Meditation, yoga and vagus nerve exercises are a few ways to help you relax more. Additionally, magnesium supplements or salt baths, chamomile tea and L-theanine can aid relaxation
  • Ensuring good sleep is vital in order to help the body regenerate, and again to reduce the risk of excess stress chemical exposure. Relaxation methods as mentioned above, reading, lavender essential oil, avoiding/limiting caffeine, not eating too late, minimising blue light exposure from screens by using blue light filters, and doing anything that helps you wind down can help with good sleep.
  • Regular exercise can help improve beneficial bacterial diversity, strengthen the gut lining, reduce inflammation and increase SCFA levels
  • Supplements such as probiotics, prebiotics, polyphenol plant nutrients, butyrate, omega-3, curcumin (from turmeric), vitamins and choline can play a role in rebuilding and improving gut and liver health.

And there you have it – an understanding of the importance of the gut in liver health, and strategies to help protect the liver and improve its health.

If you or anyone you know is affected by fatty liver, or any other health problems, then please book a your 15 Minute Discovery Call with us to see how The Green Doctor to see how we can help you.

Book your discover call here: Consultations – The Green Doctor

The information shared in this section is not intended to replace the advice of your medical practitioner. If you would like to make nutrition and lifestyle changes, please consult with The Green Doctor, and together we can work with your doctor to help optimise your health and well-being.

References and further information for this article – 

Liver and gut health:

Arab JP, Karpen SJ, Dawson PA, Arrese M, Trauner M. Bile acids and nonalcoholic fatty liver disease: Molecular insights and therapeutic perspectives. Hepatology. 2017;65(1):350–362. doi:10.1002/hep.28709

Carey MC, Small DM. Micellar properties of bile salts: Correlation with physiological function. Science. 1972;173(3992):621–626. doi:10.1126/science.173.3992.621

Chen J and Vitetta L. Gut Microbiota Metabolites in NAFLD Pathogenesis and Therapeutic Interventions. Int. J. Mol. Sci. 2020, 21(15), 5214

Dawson PA, Karpen SJ. Intestinal transport and metabolism of bile acids. J Lipid Res. 2015;56(6):1085–1099. doi:10.1194/jlr.R054114

Hofmann AF. The continuing importance of bile acids in liver and intestinal disease. Arch Intern Med. 1999;159(22):2647–2658. doi:10.1001/archinte.159.22.2647

Jasirwan, C. O. M., Lesmana, C. R. A., Hasan, I., Sulaiman, A. S., & Gani, R. A. (2019). The role of gut microbiota in non-alcoholic fatty liver disease: Pathways of mechanisms. Bioscience of Microbiota, Food and Health, 38(3), 81–88.

Joon A, Sharma A, Jalandra R, et al. Nonalcoholic Fatty Liver Disease and Gut-liver Axis: Role of Intestinal Microbiota and Therapeutic Mechanisms. J Transl Gastroenterol. 2024;2(1):38–51. doi:10.14218/JTG.2023.00018.

Mpountouridis A, Tsigalou C, Bezirtzoglou I, Stavropoulou E. Gut microbiome in non-alcoholic fatty liver disease. Front Gastroenterol. 2024;3:1534431. doi:10.3389/fgstr.2024.1534431.

Park, E., Jeong, J.-J., Won, S.-M., Sharma, S. P., Gebru, Y. A., Ganesan, R., Gupta, H., Suk, K. T., & Kim, D. J. (2021). Gut microbiota-related cellular and molecular mechanisms in the progression of nonalcoholic fatty liver disease. Cells, 10(10), 2634.

Russell DW. The enzymes, regulation, and genetics of bile acid synthesis. Annu Rev Biochem. 2003;72:137–174. doi:10.1146/annurev.biochem.72.121801.161712

Spencer MD, Hamp TJ, Reid RW, et al. Association between composition of the human gastrointestinal microbiome and development of fatty liver with choline deficiency. Gastroenterology. 2011.

Swamikkannu DM, Dasarapu S, Velivela S, et al. The gut-liver nexus: exploring gut microbiota dysbiosis in non-alcoholic fatty liver disease and its therapeutic implications. Egypt Liver J. 2024;14:28. doi:10.1186/s43066-024-00331-w.

Wahlström A, Sayin SI, Marschall HU, Bäckhed F. Intestinal crosstalk between bile acids and microbiota and its impact on host metabolism. Cell Metab. 2016;24(1):41–50. doi:10.1016/j.cmet.2016.05.005

Younossi Z, Anstee QM, Marietti M, et al. Global burden of NAFLD and NASH: trends, predictions, risk factors and prevention. Nat Rev Gastroenterol Hepatol. 2018;15(1):11–20. doi:10.1038/nrgastro.2017.109.

Zhang X, Zhang L, Zhang H, et al. Gut Microbiome-Mediated Alteration of Immunity, Inflammation, and Metabolism Involved in the Regulation of Non-alcoholic Fatty Liver Disease. Front Microbiol. 2021;12:761836. doi:10.3389/fmicb.2021.761836.

Zhao Y, Zhang X. Secondary bile acids and their roles in metabolic diseases. Front Endocrinol (Lausanne). 2021;12:696844.

 

Leaky gut video: https://www.youtube.com/watch?v=9vKk7eDLte8

 

Gut health interventions:

Ali, A., & Al Hussaini, K. I. (2024). Pesticides: Unintended impact on the hidden world of gut microbiota. Metabolites, 14(3), 155. https://doi.org/10.3390/metabo14030155

Li, Y., Hao, Y., Fan, F., & Zhang, B. (2018). The role of microbiome in insomnia, circadian disturbance and depression. Frontiers in Psychiatry, 9, 669. https://doi.org/10.3389/fpsyt.2018.00669

Marcari, A. B., Paiva, A. D., Simon, C. R., & Dos Santos, M. E. S. M. (2025). Leaky gut syndrome: An interplay between nutrients and dysbiosis. Current Nutrition Reports, 14(1), 25. https://doi.org/10.1007/s13668-025-00614-7

Ramirez, J., Guarner, F., Bustos Fernandez, L., Maruy, A., Sdepanian, V. L., & Cohen, H. (2020). Antibiotics as major disruptors of gut microbiota. Frontiers in Cellular and Infection Microbiology, 10, 572912. https://doi.org/10.3389/fcimb.2020.572912

Sun, Y., Ju, P., Xue, T., Ali, U., Cui, D., & Chen, J. (2023). Alteration of faecal microbiota balance related to long-term deep meditation. General Psychiatry, 36(1), e100893. https://doi.org/10.1136/gpsych-2022-100893

Varghese, S., Rao, S., Khattak, A., Zamir, F., & Chaari, A. (2024). Physical exercise and the gut microbiome: A bidirectional relationship influencing health and performance. Nutrients, 16(21), 3663. https://doi.org/10.3390/nu16213663

Wankhede, N. L., Kale, M. B., Kyada, A., M, R. M., Chaudhary, K., Naidu, K. S., Rahangdale, S., Shende, P. V., Taksande, B. G., Khalid, M., Gulati, M., Umekar, M. J., Fareed, M., Kopalli, S. R., & Koppula, S. (2025). Sleep deprivation-induced shifts in gut microbiota: Implications for neurological disorders. Neuroscience, 565, 99–116. https://doi.org/10.1016/j.neuroscience.2024.11.070

 

 

Special thanks to Microbiome Labs for allowing me to use their gut images

Liver image link: https://professionals.symprove.com/blogs/educational-resources/gut-microbiome-as-a-therapeutic-target-in-chronic-liver-diseases

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